If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ), 'gf_id' => 'HOM05D000604', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000604' ), 'data_identifier' => 'HOM05D000604', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000604', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11450' => 'bna', 'A01p11470' => 'bna', 'A01p11830' => 'bna', 'A01p29200' => 'bna', 'A02p28870' => 'bna', 'A03p11800' => 'bna', 'A03p52260' => 'bna', 'A06p46720' => 'bna', 'A07p11690' => 'bna', 'A07p12190' => 'bna', 'A08p14450' => 'bna', 'A08p14470' => 'bna', 'A08p26150' => 'bna', 'A09p38800' => 'bna', 'A10p08380' => 'bna', 'A10p08390' => 'bna', 'Aa31LG5G9440' => 'aar', 'Aa31LG6G2150' => 'aar', 'Aa31LG6G2170' => 'aar', 'Aa31LG9G7950' => 'aar', 'Aa31sc158G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1847' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.533' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2279' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3897' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3972' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.628' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.631' => 'aag', 'Actinidia09673' => 'ach', 'Actinidia09674' => 'ach', 'Actinidia13225' => 'ach', 'Actinidia15358' => 'ach', 'Actinidia19814' => 'ach', 'Actinidia19815' => 'ach', 'Actinidia22517' => 'ach', 'Actinidia28390' => 'ach', 'Actinidia35427' => 'ach', 'Actinidia37120' => 'ach', 'Ah.04g152290' => 'amhyb', 'Ah.04g154050' => 'amhyb', 'Ah.04g154060' => 'amhyb', 'Ah.04g154070' => 'amhyb', 'Ah.04g159950' => 'amhyb', 'Ah.05g176870' => 'amhyb', 'Ah.10g032170' => 'amhyb', 'Ah.10g032200' => 'amhyb', 'AL1G41160' => 'aly', 'AL1G50290' => 'aly', 'AL4G19120' => 'aly', 'AL6G15620' => 'aly', 'AL6G21620' => 'aly', 'AL7G34450' => 'aly', 'AL7G34460' => 'aly', 'AL7G34560' => 'aly', 'AL7G34570' => 'aly', 'AL8G14010' => 'aly', 'Aqoxy1G02180' => 'aox', 'Aqoxy3G00886' => 'aox', 'Aqoxy5G00501' => 'aox', 'Aqoxy5G00580' => 'aox', 'Aqoxy5G01563' => 'aox', 'Aqoxy5G01616_Aqoxy5G01617' => 'aox', 'Aqoxy6G01124' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2H30NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31EV9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SD2CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVL1N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FFMP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GY8SZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0TKFM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQ82RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3YPB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNWS3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YU2Z9Z' => 'arhy', 'AT1G27630' => 'ath', 'AT1G35440' => 'ath', 'AT2G26430' => 'ath', 'AT4G19560' => 'ath', 'AT4G19600' => 'ath', 'AT4G19610' => 'ath', 'AT5G05720' => 'ath', 'AT5G08695' => 'ath', 'AT5G45190' => 'ath', 'ATR0559G157' => 'atr', 'ATR0626G037' => 'atr', 'ATR0680G299' => 'atr', 'ATR0680G306' => 'atr', 'ATR0706G007' => 'atr', 'ATR0733G135' => 'atr', 'ATR1006G001' => 'atr', 'ATR1149G096' => 'atr', 'Atru.BG.155.p' => 'acertr', 'Atru.chr1.191' => 'acertr', 'Atru.chr1.192' => 'acertr', 'Atru.chr1.193' => 'acertr', 'Atru.chr10.388' => 'acertr', 'Atru.chr10.624' => 'acertr', 'Atru.chr12.650' => 'acertr', 'Atru.chr12.677' => 'acertr', 'Atru.chr13.417' => 'acertr', 'Atru.chr4.2507' => 'acertr', 'AUR62000905' => 'cqu', 'AUR62005070' => 'cqu', 'AUR62006166' => 'cqu', 'AUR62012067' => 'cqu', 'AUR62014490' => 'cqu', 'AUR62019648' => 'cqu', 'AUR62024327' => 'cqu', 'AUR62026050' => 'cqu', 'AUR62034507' => 'cqu', 'AUR62034632' => 'cqu', 'AUR62036638' => 'cqu', 'AUR62038096' => 'cqu', 'AUR62038635' => 'cqu', 'AUR62039584' => 'cqu', 'BcaB01g00834' => 'bca', 'BcaB01g04597' => 'bca', 'BcaB01g04598' => 'bca', 'BcaB03g11633' => 'bca', 'BcaB03g13665' => 'bca', 'BcaB03g13978' => 'bca', 'BcaB04g20264' => 'bca', 'BcaB07g30473' => 'bca', 'BcaC01g00623' => 'bca', 'BcaC01g01585' => 'bca', 'BcaC01g06938' => 'bca', 'BcaC03g16727' => 'bca', 'BcaC04g20803' => 'bca', 'BcaC06g31569' => 'bca', 'BcaC06g34484' => 'bca', 'BcaC06g35302' => 'bca', 'BcaC09g49413' => 'bca', 'BcaC09g51398' => 'bca', 'BcaNung01771' => 'bca', 'BolC1t01324H' => 'bol', 'BolC1t01328H' => 'bol', 'BolC1t03655H' => 'bol', 'BolC2t10651H' => 'bol', 'BolC3t13833H' => 'bol', 'BolC3t19693H' => 'bol', 'BolC3t20498H' => 'bol', 'BolC7t42271H' => 'bol', 'BolC7t42325H' => 'bol', 'BolC7t43329H' => 'bol', 'BolC9t56779H' => 'bol', 'BolC9t56780H' => 'bol', 'BolC9t56781H' => 'bol', 'BraA01t01091Z' => 'bra', 'BraA01t01094Z' => 'bra', 'BraA01t02975Z' => 'bra', 'BraA02t07920Z' => 'bra', 'BraA03t10491Z' => 'bra', 'BraA06t27544Z' => 'bra', 'BraA07t28954Z' => 'bra', 'BraA07t29003Z' => 'bra', 'BraA08t33434Z' => 'bra', 'BraA08t34565Z' => 'bra', 'BraSC37t46166Z' => 'bra', 'C01p13520' => 'bna', 'C01p13560' => 'bna', 'C01p36990' => 'bna', 'C02p45910' => 'bna', 'C03p13850' => 'bna', 'C03p74400' => 'bna', 'C03p82560' => 'bna', 'C05p25700' => 'bna', 'C07p17650' => 'bna', 'C07p18150' => 'bna', 'C07p27960' => 'bna', 'C07p27970' => 'bna', 'C09p38990' => 'bna', 'C09p39000' => 'bna', 'C09p39010' => 'bna', 'CAN.G134.221' => 'can', 'CAN.G389.5' => 'can', 'CAN.G907.26' => 'can', 'CAN.G959.17' => 'can', 'CANSAT01G1793' => 'cansat', 'CANSAT11G0862' => 'cansat', 'CANSAT35G1381' => 'cansat', 'CANSAT35G1438' => 'cansat', 'CANSAT54G2755' => 'cansat', 'CANSAT56G2040' => 'cansat', 'CANSAT56G2059' => 'cansat', 'CANSAT78G0138' => 'cansat', 'CANSAT78G1101' => 'cansat', 'CARHR118360' => 'chi', 'CARHR134170' => 'chi', 'CARHR134180' => 'chi', 'CARHR177350' => 'chi', 'CARHR204590' => 'chi', 'CARHR207550' => 'chi', 'CARHR226360' => 'chi', 'CARHR226390' => 'chi', 'CARHR226400' => 'chi', 'CARHR226420' => 'chi', 'Carub.0001s2614' => 'cru', 'Carub.0001s3305' => 'cru', 'Carub.0004s0633' => 'cru', 'Carub.0006s0461' => 'cru', 'Carub.0007s2157' => 'cru', 'Carub.0007s2158' => 'cru', 'Carub.0007s2164' => 'cru', 'Carub.0008s0299' => 'cru', 'Ca_02808_v3' => 'car', 'Ca_03656_v3' => 'car', 'Ca_08573_v3' => 'car', 'Ca_10922_v3' => 'car', 'Ca_14509_v3' => 'car', 'Ca_18784_v3' => 'car', 'Ca_25893_v3' => 'car', 'CBR_g33926' => 'cbr', 'CBR_g41142' => 'cbr', 'CBR_g44491' => 'cbr', 'Cc02_g32830' => 'ccan', 'Cc03_g03490' => 'ccan', 'Cc03_g03500' => 'ccan', 'Cc09_g04940' => 'ccan', 'Cc09_g05400' => 'ccan', 'Cc10_g02490' => 'ccan', 'CDE01G0628' => 'cde', 'CDE05G1567' => 'cde', 'CDE05G2931' => 'cde', 'CDE05G3027' => 'cde', 'CDE05G3452' => 'cde', 'CDE06G0337' => 'cde', 'CDE07G0023' => 'cde', 'CDE11G0746' => 'cde', 'CDE11G1039' => 'cde', 'CDE11G1212' => 'cde', 'Cfa000663' => 'cfa', 'Cfa000744' => 'cfa', 'Cfa002807' => 'cfa', 'Cfa008710' => 'cfa', 'Cfa013867' => 'cfa', 'Cfa015619' => 'cfa', 'Cfa017348' => 'cfa', 'Cfa023163' => 'cfa', 'Cfa026139' => 'cfa', 'Cfa026147' => 'cfa', 'Ciclev10002738m.g' => 'ccl', 'Ciclev10004575m.g' => 'ccl', 'Ciclev10005160m.g' => 'ccl', 'Ciclev10017571m.g' => 'ccl', 'Ciclev10018136m.g' => 'ccl', 'Ciclev10031535m.g' => 'ccl', 'CiPaw.01G163900' => 'cil', 'CiPaw.01G204800' => 'cil', 'CiPaw.02G095500' => 'cil', 'CiPaw.02G127200' => 'cil', 'CiPaw.04G077700' => 'cil', 'CiPaw.07G157800' => 'cil', 'CiPaw.09G150500' => 'cil', 'CiPaw.10G062200' => 'cil', 'CiPaw.10G111800' => 'cil', 'ClCG01G008990' => 'cla', 'ClCG01G025560' => 'cla', 'ClCG02G018570' => 'cla', 'ClCG02G018580' => 'cla', 'ClCG03G016990' => 'cla', 'ClCG06G006030' => 'cla', 'ClCG06G006040' => 'cla', 'ClCG07G014770' => 'cla', 'ClCG08G014790' => 'cla', 'COL.COLO4_23726' => 'col', 'COL.COLO4_26253' => 'col', 'COL.COLO4_30927' => 'col', 'COL.COLO4_30935' => 'col', 'Cpa.g.sc192.5' => 'cpa', 'Cpa.g.sc683.1' => 'cpa', 'Cpa.g.sc81.66' => 'cpa', 'Cpa.g.sc882.1' => 'cpa', 'Cpa.g.sc882.2' => 'cpa', 'Cre02.g079400' => 'cre', 'Cre07.g321650' => 'cre', 'Cre10.g453050' => 'cre', 'Cre14.g613900' => 'cre', 'Cre16.g685200' => 'cre', 'CsaV3_1G038950' => 'csa', 'CsaV3_1G046690' => 'csa', 'CsaV3_2G028960' => 'csa', 'CsaV3_4G006300' => 'csa', 'CsaV3_6G013630' => 'csa', 'CsaV3_6G038250' => 'csa', 'CsaV3_6G052810' => 'csa', 'CSS0000528' => 'camsi', 'CSS0008329' => 'camsi', 'CSS0014014' => 'camsi', 'CSS0015336' => 'camsi', 'CSS0015734' => 'camsi', 'CSS0024194' => 'camsi', 'CSS0024617' => 'camsi', 'CSS0035141' => 'camsi', 'CSS0037056' => 'camsi', 'CSS0048299' => 'camsi', 'DCAR_002394' => 'dca', 'DCAR_007039' => 'dca', 'DCAR_015197' => 'dca', 'DCAR_017524' => 'dca', 'DCAR_017525' => 'dca', 'DCAR_019166' => 'dca', 'DCAR_020452' => 'dca', 'DCAR_027661' => 'dca', 'DCAR_030621' => 'dca', 'Dinv00508' => 'din', 'Dinv01785' => 'din', 'Dinv05871' => 'din', 'Dinv19606' => 'din', 'Dinv31782' => 'din', 'Dinv36115' => 'din', 'Dinv36559' => 'din', 'Dinv38427' => 'din', 'Dinv42501' => 'din', 'Duzib052G1102' => 'dzi', 'Duzib093G1349' => 'dzi', 'Duzib116G0069' => 'dzi', 'Duzib128G0428' => 'dzi', 'Duzib132G1124' => 'dzi', 'Duzib151G0516' => 'dzi', 'Duzib192G0430' => 'dzi', 'Duzib212G0262' => 'dzi', 'Duzib235G1121' => 'dzi', 'Duzib235G1210' => 'dzi', 'ECA232G0151' => 'eca', 'ECA236G3264' => 'eca', 'ECA240G3325' => 'eca', 'ECA240G3474' => 'eca', 'ECA246G3467' => 'eca', 'ECA246G5101' => 'eca', 'EL10Ac1g00628' => 'bvu', 'EL10Ac2g02981' => 'bvu', 'EL10Ac3g06948' => 'bvu', 'EL10Ac4g09279' => 'bvu', 'EL10Ac4g09280' => 'bvu', 'EL10Ac4g09282' => 'bvu', 'EL10Ac6g13453' => 'bvu', 'EL10As3g23366' => 'bvu', 'Eucgr.E01911' => 'egr', 'Eucgr.H03550' => 'egr', 'Eucgr.H04430' => 'egr', 'Eucgr.K02063' => 'egr', 'FAN02G0036' => 'fan', 'FAN02G1130' => 'fan', 'FAN02G4461' => 'fan', 'FAN04G1938' => 'fan', 'FAN05G1038' => 'fan', 'FAN05G1905' => 'fan', 'FAN05G3414' => 'fan', 'FAN05G3826' => 'fan', 'FAN05G4668' => 'fan', 'FAN05G4967' => 'fan', 'FAN07G0573' => 'fan', 'FAN07G1076' => 'fan', 'FAN08G1706' => 'fan', 'FAN09G1402' => 'fan', 'FAN09G4787' => 'fan', 'FAN09G4843' => 'fan', 'FAN11G0830' => 'fan', 'FAN12G2437' => 'fan', 'FAN14G1578' => 'fan', 'FAN14G1660' => 'fan', 'FAN14G1953' => 'fan', 'FAN14G2543' => 'fan', 'FAN14G4098' => 'fan', 'FAN15G1061' => 'fan', 'FAN16G0408' => 'fan', 'FAN16G3283' => 'fan', 'FAN17G1083' => 'fan', 'FAN17G2003' => 'fan', 'FAN21G2591' => 'fan', 'FAN21G3921' => 'fan', 'FAN22G0201' => 'fan', 'FAN22G0669' => 'fan', 'FAN25G0167' => 'fan', 'FAN25G0854' => 'fan', 'FAN26G1560' => 'fan', 'FAN27G0979' => 'fan', 'FvH4_2g39390' => 'fve', 'FvH4_3g11840' => 'fve', 'FvH4_3g15520' => 'fve', 'FvH4_3g15521' => 'fve', 'FvH4_4g15100' => 'fve', 'FvH4_4g33640' => 'fve', 'FvH4_4g33721' => 'fve', 'FvH4_5g38400' => 'fve', 'FvH4_6g04870' => 'fve', 'FvH4_6g16340' => 'fve', 'FvH4_6g48420' => 'fve', 'Glyma.07G223700' => 'gma', 'Glyma.08G168800' => 'gma', 'Glyma.09G265100' => 'gma', 'Glyma.10G158100' => 'gma', 'Glyma.10G249800' => 'gma', 'Glyma.11G004500' => 'gma', 'Glyma.13G032300' => 'gma', 'Glyma.14G154500' => 'gma', 'Glyma.15G258300' => 'gma', 'Glyma.17G017500' => 'gma', 'Glyma.18G225850' => 'gma', 'Glyma.20G023500' => 'gma', 'Glyma.20G023800' => 'gma', 'Glyma.20G143800' => 'gma', 'Glyma.20G230500' => 'gma', 'Gohir.A01G023200' => 'ghi', 'Gohir.A01G133500' => 'ghi', 'Gohir.A01G141452' => 'ghi', 'Gohir.A05G191300' => 'ghi', 'Gohir.A09G076500' => 'ghi', 'Gohir.A10G046400' => 'ghi', 'Gohir.A10G047001' => 'ghi', 'Gohir.D01G021200' => 'ghi', 'Gohir.D01G021233' => 'ghi', 'Gohir.D01G021266' => 'ghi', 'Gohir.D01G117700' => 'ghi', 'Gohir.D01G132200' => 'ghi', 'Gohir.D05G194600' => 'ghi', 'Gohir.D07G117080' => 'ghi', 'Gohir.D09G076400' => 'ghi', 'Gohir.D10G047700' => 'ghi', 'Gohir.D10G048200' => 'ghi', 'Gorai.002G023700' => 'gra', 'Gorai.002G143200' => 'gra', 'Gorai.002G163800' => 'gra', 'Gorai.006G091600' => 'gra', 'Gorai.009G199500' => 'gra', 'Gorai.011G050800' => 'gra', 'Gorai.011G051300' => 'gra', 'GSVIVG01009762001' => 'vvi', 'GSVIVG01012163001' => 'vvi', 'GSVIVG01013628001' => 'vvi', 'GSVIVG01015968001' => 'vvi', 'GSVIVG01017929001' => 'vvi', 'GSVIVG01017931001' => 'vvi', 'GSVIVG01020280001' => 'vvi', 'GSVIVG01020870001' => 'vvi', 'GSVIVG01029422001' => 'vvi', 'HanXRQChr03g0065051' => 'han', 'HanXRQChr04g0119081' => 'han', 'HanXRQChr05g0151301' => 'han', 'HanXRQChr06g0172701' => 'han', 'HanXRQChr09g0247851' => 'han', 'HanXRQChr12g0365091' => 'han', 'HanXRQChr13g0402141' => 'han', 'HanXRQChr13g0413231' => 'han', 'HanXRQChr13g0424231' => 'han', 'HanXRQChr15g0464271' => 'han', 'HanXRQChr17g0537651' => 'han', 'Haze_00925' => 'cav', 'Haze_00926' => 'cav', 'Haze_05992' => 'cav', 'Haze_06158' => 'cav', 'Haze_11719' => 'cav', 'Haze_20822' => 'cav', 'Haze_22544' => 'cav', 'Hma1.2p1_0071F.1_g037955' => 'hma', 'Hma1.2p1_0151F.1_g067550' => 'hma', 'Hma1.2p1_0326F.1_g126230' => 'hma', 'Hma1.2p1_0517F.1_g171010' => 'hma', 'Hma1.2p1_0589F.1_g184700' => 'hma', 'Hma1.2p1_0637F.1_g193380' => 'hma', 'Hma1.2p1_0702F.1_g206100' => 'hma', 'HPP92_002278' => 'vpl', 'HPP92_016421' => 'vpl', 'HPP92_016437' => 'vpl', 'HPP92_016808' => 'vpl', 'HPP92_017183' => 'vpl', 'HPP92_017559' => 'vpl', 'HPP92_021559' => 'vpl', 'HPP92_026369' => 'vpl', 'HPP92_027326' => 'vpl', 'Hund07022' => 'sun', 'Hund12158' => 'sun', 'Hund13010' => 'sun', 'Hund13011' => 'sun', 'Hund17183' => 'sun', 'Hund20362' => 'sun', 'Hund20696' => 'sun', 'Hund24787' => 'sun', 'Lalb_Chr03g0031731' => 'lal', 'Lalb_Chr05g0210901' => 'lal', 'Lalb_Chr05g0210911' => 'lal', 'Lalb_Chr09g0319741' => 'lal', 'Lalb_Chr09g0328901' => 'lal', 'Lalb_Chr15g0088661' => 'lal', 'Lalb_Chr15g0088671' => 'lal', 'Lalb_Chr18g0057791' => 'lal', 'Lalb_Chr19g0132151' => 'lal', 'Lalb_Chr20g0108631' => 'lal', 'Lalb_Chr21g0310821' => 'lal', 'Lj1A1140T44' => 'lonja', 'Lj1C1140G9' => 'lonja', 'Lj1C1245G4' => 'lonja', 'Lj1g0003482' => 'lja', 'Lj2A328T81' => 'lonja', 'Lj2C328T20' => 'lonja', 'Lj3g0003298' => 'lja', 'Lj3g0011224' => 'lja', 'Lj3g0019786' => 'lja', 'Lj4A35T46' => 'lonja', 'Lj4C35T2' => 'lonja', 'Lj4g0005998' => 'lja', 'Lj4g0013172' => 'lja', 'Lj5g0017021' => 'lja', 'Lj6A239T12' => 'lonja', 'Lj6A598G56' => 'lonja', 'Lj6A598T57' => 'lonja', 'Lj6C237G2' => 'lonja', 'Lj6C237T1' => 'lonja', 'Lj6C238T5' => 'lonja', 'Lj6C239T2' => 'lonja', 'Lj6P238T8' => 'lonja', 'Lj9A677G36' => 'lonja', 'Lsat_1_v5_gn_0_34680' => 'lsa', 'Lsat_1_v5_gn_3_20820' => 'lsa', 'Lsat_1_v5_gn_3_98341' => 'lsa', 'Lsat_1_v5_gn_5_26940' => 'lsa', 'Lsat_1_v5_gn_5_63320' => 'lsa', 'Lsat_1_v5_gn_7_29360' => 'lsa', 'Lsat_1_v5_gn_7_65761' => 'lsa', 'Lsat_1_v5_gn_8_124560' => 'lsa', 'Lsat_1_v5_gn_8_124580' => 'lsa', 'Lsat_1_v5_gn_8_4681' => 'lsa', 'Manes.03G180900' => 'mes', 'Manes.05G155500' => 'mes', 'Manes.06G174000' => 'mes', 'Manes.08G028200' => 'mes', 'Manes.13G073400' => 'mes', 'Manes.14G011800' => 'mes', 'Manes.16G052000' => 'mes', 'Mapoly0007s0068' => 'mpo', 'Mapoly0030s0107' => 'mpo', 'Mapoly0037s0071' => 'mpo', 'MBI02_g32745_MAGBIO' => 'mbi', 'MBI02_g43345_MAGBIO' => 'mbi', 'MBI02_g43347_MAGBIO' => 'mbi', 'MBI03_g07307_MAGBIO' => 'mbi', 'MBI07_g25513_MAGBIO' => 'mbi', 'MBI10_g00757_MAGBIO' => 'mbi', 'MBI13_g05973_MAGBIO' => 'mbi', 'MBI14_g03613_MAGBIO' => 'mbi', 'MBI17_g30294_MAGBIO' => 'mbi', 'MBI17_g34763_MAGBIO' => 'mbi', 'MBI18_g01965_MAGBIO' => 'mbi', 'MBI18_g32818_MAGBIO' => 'mbi', 'MBI18_g38867_MAGBIO' => 'mbi', 'MBI19_g18848_MAGBIO' => 'mbi', 'MBI19_g39724_MAGBIO' => 'mbi', 'MBI19_g46935_MAGBIO' => 'mbi', 'MBI19_g47814_MAGBIO' => 'mbi', 'MBI19_g47815_MAGBIO' => 'mbi', 'MCO01G632' => 'mco', 'MCO04G357' => 'mco', 'MCO05G271' => 'mco', 'MCO07G708' => 'mco', 'MD00G1114700' => 'mdo', 'MD04G1049900' => 'mdo', 'MD04G1088400' => 'mdo', 'MD04G1213300' => 'mdo', 'MD05G1222500' => 'mdo', 'MD05G1222600' => 'mdo', 'MD05G1258600' => 'mdo', 'MD05G1258800' => 'mdo', 'MD06G1050000' => 'mdo', 'MD08G1026200' => 'mdo', 'MD10G1204100' => 'mdo', 'MD10G1204200' => 'mdo', 'MD10G1238300' => 'mdo', 'MD12G1227500' => 'mdo', 'MD13G1188600' => 'mdo', 'MD13G1188700' => 'mdo', 'MD15G1023000' => 'mdo', 'MD16G1189200' => 'mdo', 'Medtr1g104820' => 'mtr', 'Medtr2g018390' => 'mtr', 'Medtr2g068690' => 'mtr', 'Medtr4g083690' => 'mtr', 'Medtr5g010140' => 'mtr', 'Medtr5g055170' => 'mtr', 'Medtr5g071540' => 'mtr', 'Medtr7g094060' => 'mtr', 'Medtr7g094070' => 'mtr', 'Medtr7g094660' => 'mtr', 'Medtr7g096260' => 'mtr', 'Medtr7g096430' => 'mtr', 'MELO3C007029.2' => 'cme', 'MELO3C010964.2' => 'cme', 'MELO3C014488.2' => 'cme', 'MELO3C016321.2' => 'cme', 'MELO3C019652.2' => 'cme', 'MELO3C021786.2' => 'cme', 'Migut.B01297' => 'egut', 'Migut.B01301' => 'egut', 'Migut.C00763' => 'egut', 'Migut.D02542' => 'egut', 'Migut.D02558' => 'egut', 'Migut.G00318' => 'egut', 'Migut.J00575' => 'egut', 'Migut.K01228' => 'egut', 'Migut.K01229' => 'egut', 'Migut.L01415' => 'egut', 'Migut.M00474' => 'egut', 'Migut.M00477' => 'egut', 'Migut.M00563' => 'egut', 'Migut.M00570' => 'egut', 'Migut.M00571' => 'egut', 'Migut.M00572' => 'egut', 'Migut.N00172' => 'egut', 'Migut.N00466' => 'egut', 'Migut.O00375' => 'egut', 'Migut.O00377' => 'egut', 'Migut.O00466' => 'egut', 'MSTRG.12452' => 'ama', 'MSTRG.1253' => 'ama', 'MSTRG.18261' => 'ama', 'MSTRG.2393' => 'ama', 'MSTRG.24746' => 'ama', 'MSTRG.7589' => 'ama', 'MSTRG.7607' => 'ama', 'MSTRG.7900' => 'ama', 'Nitab4.5_0000123g0280' => 'nta', 'Nitab4.5_0000245g0230' => 'nta', 'Nitab4.5_0000260g0070' => 'nta', 'Nitab4.5_0000632g0160' => 'nta', 'Nitab4.5_0000844g0350' => 'nta', 'Nitab4.5_0001165g0020' => 'nta', 'Nitab4.5_0002186g0110' => 'nta', 'Nitab4.5_0003682g0050' => 'nta', 'Nitab4.5_0003729g0010' => 'nta', 'Nitab4.5_0005181g0060' => 'nta', 'Nitab4.5_0006275g0010' => 'nta', 'Nitab4.5_0010625g0010' => 'nta', 'Nn1g01904' => 'nnu', 'Nn1g02245' => 'nnu', 'Nn1g05818' => 'nnu', 'Nn1g08454' => 'nnu', 'Nn1g08459' => 'nnu', 'Nn3g19350' => 'nnu', 'Nn3g21243' => 'nnu', 'Nn4g26073' => 'nnu', 'Nn5g29696' => 'nnu', 'Nn8g38559' => 'nnu', 'Oeu007025.1' => 'oeu', 'Oeu014816.1' => 'oeu', 'Oeu018212.2' => 'oeu', 'Oeu025244.1' => 'oeu', 'Oeu025246.1' => 'oeu', 'Oeu026653.1' => 'oeu', 'Oeu028231.1' => 'oeu', 'Oeu029823.1' => 'oeu', 'Oeu030421.1' => 'oeu', 'Oeu030422.1' => 'oeu', 'Oeu030590.1' => 'oeu', 'Oeu037964.1' => 'oeu', 'Oeu049932.2' => 'oeu', 'Oeu052139.1' => 'oeu', 'Oeu055122.1' => 'oeu', 'Os01g0377500' => 'osa', 'Os02g0133000' => 'osa', 'Os02g0438200' => 'osa', 'Os04g0611500' => 'osa', 'Os11g0157100' => 'osa', 'Os12g0485400' => 'osa', 'Peaxi162Scf00003g05382' => 'pax', 'Peaxi162Scf00028g00189' => 'pax', 'Peaxi162Scf00036g01624' => 'pax', 'Peaxi162Scf00132g00024' => 'pax', 'Peaxi162Scf00202g00034' => 'pax', 'Peaxi162Scf00225g00622' => 'pax', 'Peaxi162Scf00437g00323' => 'pax', 'Peaxi162Scf01056g00011' => 'pax', 'PGR004G0073' => 'pgr', 'PGR004G1493' => 'pgr', 'PGR004G1922' => 'pgr', 'PGR004G2675' => 'pgr', 'PGR031G1961' => 'pgr', 'PGR119G0174' => 'pgr', 'PGSC0003DMG400003689' => 'stu', 'PGSC0003DMG400007320' => 'stu', 'PGSC0003DMG400017127' => 'stu', 'PGSC0003DMG400022453' => 'stu', 'PGSC0003DMG401031803' => 'stu', 'Phvul.001G070900' => 'pvu', 'Phvul.002G047100' => 'pvu', 'Phvul.003G093200' => 'pvu', 'Phvul.003G138600' => 'pvu', 'Phvul.005G049900' => 'pvu', 'Phvul.007G054800' => 'pvu', 'Phvul.007G183500' => 'pvu', 'Potri.001G081000' => 'ptr', 'Potri.001G081600' => 'ptr', 'Potri.002G032300' => 'ptr', 'Potri.003G148800' => 'ptr', 'Potri.003G149600' => 'ptr', 'Potri.005G097400' => 'ptr', 'Potri.007G067100' => 'ptr', 'Potri.008G043600' => 'ptr', 'Potri.008G150500' => 'ptr', 'Potri.010G090301' => 'ptr', 'Potri.010G090400' => 'ptr', 'Pp3c11_15990' => 'ppa', 'Pp3c14_26890' => 'ppa', 'Pp3c15_25980' => 'ppa', 'Pp3c15_3490' => 'ppa', 'Pp3c1_13010' => 'ppa', 'Pp3c2_24700' => 'ppa', 'Pp3c2_24721' => 'ppa', 'Pp3c2_24723' => 'ppa', 'Pp3c7_14590' => 'ppa', 'Pp3c7_9260' => 'ppa', 'Pp3c9_26180' => 'ppa', 'PRCOL_00001605' => 'pco', 'PRCOL_00003844' => 'pco', 'PRCOL_00005574' => 'pco', 'PRCOL_00007254' => 'pco', 'Prupe.1G155700' => 'ppe', 'Prupe.1G374900' => 'ppe', 'Prupe.4G106000' => 'ppe', 'Prupe.4G137700' => 'ppe', 'Prupe.4G137800' => 'ppe', 'Prupe.6G162800' => 'ppe', 'Prupe.6G333200' => 'ppe', 'Prupe.7G087700' => 'ppe', 'Psat0s3970g0040' => 'psa', 'Psat1g013160' => 'psa', 'Psat2g006120' => 'psa', 'Psat2g184680' => 'psa', 'Psat3g005160' => 'psa', 'Psat3g022480' => 'psa', 'Psat4g136040' => 'psa', 'Psat7g132800' => 'psa', 'PSO017G0977' => 'pso', 'PSO017G6514' => 'pso', 'PSO063G6978' => 'pso', 'PSO135G0531' => 'pso', 'PSO161G0104' => 'pso', 'PSO170G5467' => 'pso', 'PSO210G5179' => 'pso', 'PSO478G0154' => 'pso', 'PSO478G1429' => 'pso', 'PSO541G1300' => 'pso', 'PSO724G1052' => 'pso', 'PSO764G0246' => 'pso', 'QL01p038682' => 'qlo', 'QL01p042134' => 'qlo', 'QL02p009495' => 'qlo', 'QL05p050082' => 'qlo', 'QL06p003325' => 'qlo', 'QL06p022999' => 'qlo', 'QL06p028587' => 'qlo', 'QL07p023602' => 'qlo', 'QL09p051250' => 'qlo', 'QL09p053547' => 'qlo', 'QL11p012745' => 'qlo', 'QL11p023874' => 'qlo', 'RcHm_v2.0_Chr2g0168341' => 'rch', 'RcHm_v2.0_Chr3g0451061' => 'rch', 'RcHm_v2.0_Chr3g0453411' => 'rch', 'RcHm_v2.0_Chr3g0470201' => 'rch', 'RcHm_v2.0_Chr4g0416761' => 'rch', 'RcHm_v2.0_Chr4g0443101' => 'rch', 'RcHm_v2.0_Chr5g0019271' => 'rch', 'RcHm_v2.0_Chr5g0020731' => 'rch', 'RcHm_v2.0_Chr5g0026141' => 'rch', 'RcHm_v2.0_Chr5g0026151' => 'rch', 'RcHm_v2.0_Chr6g0301611' => 'rch', 'Rhsim02G0022700' => 'rsi', 'Rhsim02G0169700' => 'rsi', 'Rhsim04G0005200' => 'rsi', 'Rhsim05G0146600' => 'rsi', 'Rhsim06G0029000' => 'rsi', 'Rhsim06G0240100' => 'rsi', 'Sabra01G0058000' => 'sbr', 'Sabra01G0058100' => 'sbr', 'Sabra01G0058200' => 'sbr', 'Sabra01G0058800' => 'sbr', 'Sabra02G0026200' => 'sbr', 'Sabra03G0108300' => 'sbr', 'Sabra03G0108600' => 'sbr', 'Sabra05G0079700' => 'sbr', 'Sabra08G0030100' => 'sbr', 'Sabra08G0114500' => 'sbr', 'Sabra10G0168700' => 'sbr', 'SalBow2G0155' => 'sbo', 'SalBow2G3137' => 'sbo', 'SalBow5G1649' => 'sbo', 'SalBow5G5210' => 'sbo', 'SalBow6G2614' => 'sbo', 'SalBow8G1358' => 'sbo', 'Sc05g0007940' => 'sci', 'Sc05g0007950' => 'sci', 'Sc13g0004280' => 'sci', 'Sc16g0008250' => 'sci', 'Sc19g0004320' => 'sci', 'Sc24g0002870' => 'sci', 'Sed0003721' => 'sed', 'Sed0003891' => 'sed', 'Sed0005592' => 'sed', 'Sed0013212' => 'sed', 'Sed0014227' => 'sed', 'Sed0015035' => 'sed', 'Sed0015153' => 'sed', 'Sed0027198' => 'sed', 'SEGI_02797' => 'sgi', 'SEGI_04759' => 'sgi', 'SEGI_06482' => 'sgi', 'SEGI_09045' => 'sgi', 'SEGI_13658' => 'sgi', 'SEGI_17383' => 'sgi', 'SEGI_18832' => 'sgi', 'SEGI_24329' => 'sgi', 'SEGI_25519' => 'sgi', 'SEGI_31332' => 'sgi', 'SEGI_36439' => 'sgi', 'SGA_v2.0_scaffold10G05101' => 'sas', 'SGA_v2.0_scaffold154G37146' => 'sas', 'SGA_v2.0_scaffold166G38360' => 'sas', 'SGA_v2.0_scaffold186G40121' => 'sas', 'SGA_v2.0_scaffold192G40625' => 'sas', 'SHI00415' => 'shi', 'SHI01959' => 'shi', 'SHI01960' => 'shi', 'SHI08941' => 'shi', 'SHI12967' => 'shi', 'SMO171G0100' => 'smo', 'SMO171G0112' => 'smo', 'SMO287G0022' => 'smo', 'SMO301G0078' => 'smo', 'SMO364G0238' => 'smo', 'SMO367G0440' => 'smo', 'Solyc01g098350.3' => 'sly', 'Solyc02g081940.3' => 'sly', 'Solyc07g032480.3' => 'sly', 'Solyc09g075760.4' => 'sly', 'Solyc10g078180.3' => 'sly', 'Sopen01g041910' => 'spe', 'Sopen02g026570' => 'spe', 'Sopen07g015350' => 'spe', 'Sopen09g030570' => 'spe', 'Sopen10g028860' => 'spe', 'Sp1g23300' => 'spa', 'Sp1g23850' => 'spa', 'Sp1g30170' => 'spa', 'Sp2g10000' => 'spa', 'Sp4g07260' => 'spa', 'Sp7g18140' => 'spa', 'Sp7g18170' => 'spa', 'Sp7g18180' => 'spa', 'SpUn0020_0020' => 'spa', 'TAR362G0696' => 'tar', 'TAR362G0854' => 'tar', 'TAR369G0209' => 'tar', 'TAR371G0160' => 'tar', 'TAR623G0043' => 'tar', 'TAR625G0165' => 'tar', 'TAR626G0202' => 'tar', 'TAR627G0784' => 'tar', 'TAR628G0113' => 'tar', 'TAR633G1789' => 'tar', 'TAR633G2382' => 'tar', 'TAR636G0572' => 'tar', 'THA.LOC104806208' => 'tha', 'THA.LOC104806210' => 'tha', 'THA.LOC104811369' => 'tha', 'THA.LOC104811787' => 'tha', 'THA.LOC104812562' => 'tha', 'THA.LOC104812898' => 'tha', 'THA.LOC104822833' => 'tha', 'THA.LOC104826738' => 'tha', 'Thecc.02G005200' => 'tca', 'Thecc.04G227700' => 'tca', 'Thecc.06G135500' => 'tca', 'Thecc.06G136200' => 'tca', 'Thecc.08G032500' => 'tca', 'Thecc.10G069000' => 'tca', 'Thhalv10000834m.g' => 'esa', 'Thhalv10001260m.g' => 'esa', 'Thhalv10001866m.g' => 'esa', 'Thhalv10007728m.g' => 'esa', 'Thhalv10008251m.g' => 'esa', 'Thhalv10024436m.g' => 'esa', 'Thhalv10024849m.g' => 'esa', 'Thhalv10027406m.g' => 'esa', 'TPR.G31111' => 'tpr', 'TPR.G33821' => 'tpr', 'TPR.G33823' => 'tpr', 'TPR.G33836' => 'tpr', 'TPR.G34064' => 'tpr', 'TPR.G5089' => 'tpr', 'TPR.G5524' => 'tpr', 'TPR.G6171' => 'tpr', 'TPR.G6694' => 'tpr', 'TWI09G1628' => 'twi', 'TWI36G1478' => 'twi', 'TWI38G0373' => 'twi', 'TWI38G0630' => 'twi', 'TWI53G1067' => 'twi', 'TWI63G0077' => 'twi', 'TWI73G0328' => 'twi', 'TWI73G0710' => 'twi', 'unitig_37.g13055' => 'ugi', 'unitig_52.g17174' => 'ugi', 'unitig_52.g17175' => 'ugi', 'unitig_62.g23671' => 'ugi', 'unitig_748.g8340' => 'ugi', 'unitig_748.g8341' => 'ugi', 'unitig_748.g8546' => 'ugi', 'unitig_750.g28505' => 'ugi', 'vmacro05554' => 'vma', 'vmacro09776' => 'vma', 'vmacro11016' => 'vma', 'vmacro11717' => 'vma', 'vmacro11718' => 'vma', 'vmacro15327' => 'vma', 'vmacro19657' => 'vma', 'vmacro21678' => 'vma', 'VMungo0251G0051' => 'vmu', 'VMungo0647G0785' => 'vmu', 'VMungo0720G0364' => 'vmu', 'VMungo0720G1622' => 'vmu', 'VMungo0720G1625' => 'vmu', 'VMungo1080G1692' => 'vmu', 'VMungo1215G2640' => 'vmu', 'Zm00001eb001290' => 'zma', 'Zm00001eb004940' => 'zma', 'Zm00001eb048550' => 'zma', 'Zm00001eb132310' => 'zma', 'Zm00001eb186000' => 'zma', 'Zm00001eb231420' => 'zma', 'Zm00001eb248650' => 'zma', 'Zm00001eb290830' => 'zma', 'Zm00001eb307170' => 'zma', 'Zm00001eb310410' => 'zma', 'Zm00001eb428220' => 'zma', 'Zm00001eb430700' => 'zma', 'Zm00001eb442350' => 'zma' ) $gf_id = 'HOM05D000604' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000604' ) $data_identifier = 'HOM05D000604' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 5, 'aag' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 10, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 8, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 10, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 9, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 15, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 16, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 4, 'mdo' => (int) 18, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 21, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 10, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442350' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1